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What I am trying to do, and what I have not been able to locate, is to take take two separate folders of images, combine them, then save as a separate file. What I have is 2 parts of an animation. And i need part 'A' to be a layer over part 'B' then become part 'C'.  Right now when i set up the action it will run through one folder (ie it will open 001, then 002 etc) but the part 'B' continues to be only 001.

Hope that makes sense, and that you can in fact have photoshop (CS2 in this case) automate and run through two separate folders of images and merge them into a new one. Thanks,