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You can use a script as part of your action..

Save the code as FileName.jsx in the Photoshops preset/scripts folder.

[code]

var doc = activeDocument;

if(doc.width.value>doc.height.value){//Landscape

    doAction("Action Name", "Action Set");

    }else{//Portrait

        doAction("Action Name", "Action Set");

}

[/code]

Amend the Action Name and Action set to suit.

Now you can create a new action that call this script that will then call the action for the correct orientation.

When recording the action use: Insert Menu Item then File - Scripts and select your script.