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I have a separate folder on C: that I called Plugins. And all the plugins go in there, in their own subfolder (very tidy). Then I make a shortcut to every subfolder, and give these their own subfolder. Example in your case:

folder Plugins

subfolder !shortcuts (containing shortcuts of the following subfolders. with the ! it stays on top))

subfolder Dreamsuite

subfolder Eyecandy

subfolder Extensis Photobevel

subfolder Flaming Pear SBP

etc etc etc

and then I paste the shortcuts in the Photoshop plugins folder. Practically speaking, I leave them all in the PS PI folder. Yet, if I want to remove something: I cut and paste the shortcut back to its original shortcuts subfolder, and out of PS.