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Hello and welcome.

I myself am not understanding what it is you want. Being an avid animator, I don't see what you mean. When you use the "Make frames from layers" command, only active layers are added to the timeline. All you would need do is to turn off/deactivate the layers you don't want showing in any given frame.

A frame in the timeline can only reflect the activated layers in the layers panel. For instance, Frame 1 would only show it's corresponding active layers, this could be one layer or many layers per frame.

I apologize. I'm just not understanding what you want.